NGS Assembly Course
Topics of this course are genome and transcriptome denovo assembly.
Course consists of lectures and hands on exercises. Used tools include Velvet, Trinity, Oases, SOAPdenovo, Minimo (AMOS).
Participants should have basic skills of Linux since all tools are based on command line interface.
Program
Preliminary program:
09:00 Introduction: genome projects, NGS data, denovo assembly methods
10:00 Coffee
10:15 Genome Assembly I (velvet)
12:15 Lunch
13:00 Genome Assembly II (SOAPdenovo)
14:00 Combining Assemblies (amos Minimo)
15:00 Coffee
15:15 RNA-Seq, Transcriptome Assembly (velvet+oases, Trinity)
16:30 Summary
17:00 End
- 55 euros + VAT (24%) for Finnish academics
- 275 euros + VAT (24%) for others
Registration
Additional information
For further information, please contact Eija Korpelainen: eija.korpelainen[at]csc.fi.
Feedback: Course feedback questionnaire
