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GPUs for molecular dynamics

So, how do they draw those fancy protein pictures?

This workshop deals with using graphics processing units (GPUs) for improving research work in the field of molecular modeling. The topics include using the extreme number-crunching power of GPUs to speed up classical molecular dynamics calculations with the Gromacs software and high-quality, high-throughput visualization of results with the VMD software.

The workshop consists of lectures given by Gromacs developers, and related hands-on exercises. The exercises are carried out in workstations powered by Nvidia Tesla cards.

Program

Day 1

9.30-10.00 Coffee
10.00-11.00 Lecture I
11.00-12.00 Lecture II
12.00-13.00 Lunch
13.00-14.30 Tutorials
14.30-14.45 Coffee
14.45-16.30 Tutorials continued

Day 2

9.30-10.30 Introduction to VMD & Using VMD with Gromacs
10.30-10.45 Coffee
10.45-12.00 Hands-on exercises
12.00-13.00 Lunch
13.00-13.45 Advanced VMD Features: Many Uses of Scripting
13.45-14.30 Hands-on exercises
14.30-14.45 Coffee
14.45-16.00 Hands-on exercises continued
16.00-16.30 Course wrap-up and discussion

Materials

Date: 28.10.2010 09:30 - 29.10.2010 16:30
Location: Premises of CSC at Keilaranta 14, Espoo, Finland.
Language: English
Lecturers: Erik Lindahl, Teemu Murtola (Stockholm University)
Price:
  • 100 euros + VAT (24%) for Finnish academics
  • 300 euros + VAT (24%) for others
The fee covers course materials, lunches as well as morning and afternoon coffees. "Finnish academics" refers to students and employees of Finnish universities, regardless their nationality.

Registration

Registration has expired 20.10.2010 16:00
There are 24 seats on the course. You may cancel your registration 3 business days before the course without a charge, after that the full fee is charged.

Additional information

Please contact courses@csc.fi for further information.

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