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Bowtie
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
Usage
You need to initialize Bowtie before using with command (this will also initialize TopHat):
module load bowtieAfter that you can start bowtie with:
bowtie
