Tehdyt toimenpiteet
ABySS at CSC
Version
ABySS 1.3.2 is available in Hippu and Vuori
Description
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The parallel version, installed at CSC is implemented using MPI and is capable of assembling large genomes.Usage
ABySS environment is set up in Hippu or Vuori with command
module load abyss
After that you can launch ABySS jobs with the ABySS command or abyss-pe script.
For example
abyss-pe k=64 n=5 name=testrun in='reads_1.fq reads_2.fq'
