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SAMtools at CSC

Version

SAMtools 0.1.17 is available in Hippu and Vuori


Description

SAMtools provides tools for using and manipulating SAM and BAM formatted alignments.
You can use SAMtools for example for indexing, variant calling and viewing alignments.
 

Usage

 To use SAMtools in Hippu or Vuori, give a set up command:

module load samtools


After this you can launch samtools

samtools



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