01                       ! batch item number
3                        ! analysis: 1=Haplotype; 2=LOD; 3=NPL; 4=IBD

02                       ! batch item number
33                       ! integer label for this run of the program

03                       ! batch item number
Episodic Ataxia (EA) pedigree: NPL            

09                       ! batch item number
MAP.DAT                  ! name of map file

10                       ! batch item number
LOCUS.DAT                ! name of locus file

11                       ! batch item number
PEDIGREE.DAT             ! name of pedigree file

12                       ! batch item number
F                        ! symbol for female (case insensitive)
M                        ! symbol for   male (case insensitive)

13                       ! batch item number
Y                        ! is trait listed in locus and pedigree files?

18                       ! batch item number
1                        ! number of quantitative variables in pedigree file

48                       ! batch item number
10000                    ! number of unconditional simulations for p-values