5.3.

RNA-seq data analysis with Chipster

March 2020

This hands-on course introduces the participants to RNA-seq data analysis methods, tools and file formats. It covers the whole workflow from quality control and alignment to quantification and differential expression analysis. The free and user-friendly Chipster software is used in the exercises, so no previous knowledge of Unix or R is required.

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Courses and workshops
Methods & Software
2020
tess
10.3.

Webinar: Running Singularity containers in Puhti

March 2020

Containers are a way to package software with its dependencies in a way that is isolated from the host system. They offer a way to install and run complex or otherwise hard to install software in a HPC environment. They are also becoming a popular way for developers to distribute their software. In this webinar we give a basic introduction to containers in general and look at running Singulariry containers in Puhti. We also discuss how to convert and run Docker containers with Singularity.

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Webinars
Methods & Software
High-Performance Computing
2020
hpc puhti singularity
10.3. - 13.3.

Spring School in Computational Chemistry 2020

March 2020

This event provides a comprehensive, tutorial-style, hands-on, introductory and intermediate-level treatment to the essential ingredients for molecular modeling and computational chemistry using modern supercomputers. Standard approaches such as classical and ab initio molecular dynamics, electronic structure models as well as several more special topics are explained and exemplified by prominent researchers in the field.

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Courses and workshops
Methods & Software
2020
python chemistry gromacs visualization software notebooks machine learning
23.3.

Webinar: CSC resources for bio-users

March 2020

CSC has been upgrading its ICT infrastructure to keep up with the pace of changing research environment. With its modern HPC and cloud environment, CSC has prepared to meet the growing demands of Finnish research. While CSC offers broad spectrum of services, this webinar will focus mainly on different services for research, keeping mainly bio-field in mind although similar services are applicable for other research areas as well

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Computing Platforms
Webinars
Data & Storage
2020
hpc cloud
25.3. - 27.3.

Advanced Parallel Programming

March 2020

This course addresses hybrid programming by combining OpenMP and MPI, as well as more advanced topics in MPI. Also, parallel I/O is discussed and exemplified in the course.

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Courses and workshops
Programming
High-Performance Computing
2020
mpi openmp tess
30.3. - 1.4.

Practical machine learning for spatial data

March 2020

This course gives a practical introduction to use machine learning, inc deep learning, methods for spatial data.

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Courses and workshops
Data & Storage
Methods & Software
2020
python gis spatial data analysis deep learning machine learning puhti
7.4.

Webinaari: Datapalvelut ammattikorkeakouluille

April 2020

Tässä webinaarissa esittelemme CSC:n palveluja etenkin ammattikorkeakoulujen näkökulmasta. Palveluita käytetään eri tarpeisiin datan elinkaaren eri vaiheissa. Webinaarissa opastetaan tarkemmin Fairdata-palveluiden käyttöä.

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Webinars
Data & Storage
2020
data fairdata
21.4.

Microbial community analysis of 16S data with Chipster

April 2020

This hands-on course introduces the participants to microbiome analysis of amplicon sequencing data. It covers the whole workflow from quality control and filtering to quantification and statistical analysis. You will learn how to compare the structure of microbial communities using ordinations and multivariate statistics, as well as indicator species analysis. The free and user-friendly Chipster software is used in the exercises, so no previous knowledge of Unix or R is required.

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Courses and workshops
Methods & Software
2010
bioinformatics chipster tess 16s
22.4. - 24.4.

Deep Learning and GPU Programming Workshop

April 2020

This hands-on training is intended for data scientists, researchers and developers looking to solve challenging problems with deep learning. The workshop combines lectures about fundamentals of Deep Learning for Computer Vision with lectures about Accelerated Computing with CUDA C/C++ and OpenACC and also includes many hands-on sessions using Jupyter Notebooks.

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Computing Platforms
Courses and workshops
Methods & Software
2020
openacc gpu deep learning machine learning
14.5. - 15.5.

Data Carpentry with R

May 2020

Data Carpentry workshops are for any researcher who has data they want to analyze, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data. We will cover data organization in spreadsheets and learn how to use the programming language R. The course is aimed at graduate students and other researchers, and you don't need to have any previous knowledge of the tools that will be presented at the workshop.

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Courses and workshops
Data & Storage
Programming
Methods & Software
2020
r visualization programming data analysis
27.4. - 25.5.

Python in High Performance computing - online course

April 2020

In this online course we teach various ways to optimise and parallelise Python programs. Among the topics are performance analysis, efficient use of NumPy arrays, extending Python with more efficient languages (Cython), and parallel computing with message passing (mpi4py) approach.

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Courses and workshops
Programming
High-Performance Computing
2020
python hpc
9.6.

Finnish OpenFOAM User Day 2020

June 2020

Annually arranged day for OpenFOAM users and new people interested in it. In this year we meet at VTT, Espoo.

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Seminars and conferences
Methods & Software
2020
openfoam computational engineering computational fluid dynamics
10.6.

Web GIS Enabled Spatial Analysis & Data Science with ArcGIS

June 2020

Analyzing vector, raster and lidar data with ArcGIS Pro and sharing data with ArcGIS Online.

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Courses and workshops
Methods & Software
2020
spatial modelling spatial data management gis spatial data analysis arcgis