Next generation sequencing data analysis with R/Bioconductor - Training
CSC's trainings and events have moved
Find our upcoming trainings and events at www.csc.fi.
This site is an archive version and is no longer updated.
Next generation sequencing data analysis with R/Bioconductor
Date: | 28.06.2012 10:00 - 30.06.2012 17:00 |
Location details: | - |
Language: | english-language |
lecturers: |
Dr Martin Morgan Fred Hutchinson Cancer Research Institute Seattle USA. |
Price: | - |
This course by Dr Martin Morgan covers R/Bioconductor functionality for several aspects of next generation sequencing data analysis, ranging from RNA-seq and ChIP-seq data analysis to variant annotation. The course consists of lectures and hands-on exercises, and it is targeted for people who already have experience with the R statistical programming language.
Program
Wednesday 27.6.2012
- Introduction: R / Bioconductor for sequence analysis
- Essential packages
- Representing reads and alignments
Thursday 28.6.2012
- RNA-seq
- Differential representation
- Clustering and classification
- Gene set enrichment
Friday 29.6.2012
- ChIP-seq
- Peak calling
- Designed experiments
- Motif discovery
- Variant annotation
- Common workflows
- Annotations and consequences
Course material and the installation package for Windows are available for download.