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Introduction to Proteomics
Aika: 25.03.2019 9:00 - 25.03.2019 17:00
Paikan tiedot: The event is organised at the CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. The best way to reach us is by public transportation; more detailed travel tips are available.
Kieli: Englanti
Luennoitsijat: Laxmana Yetukuri (CSC)
Santosh Bhosale (BTK)
Guest lectures by
Markku Varjosalo (HY)
Maciej Lalowski (HY)
  • 60 euroa + ALV (24%) suomalaisille yliopistoille, ammattikorkeakouluille ja valtion tutkimuslaitoksille
  • 280 euroa + ALV (24%) muille
The fee covers all materials, lunches as well as morning and afternoon coffees.
Ilmoittautuminen on päättynyt.
The seats are filled in the registration order. If a cancellation is received five (5) business days prior to the course, the course fee will be refunded with the exception of a handling fee of 10 €. For no-shows and cancellations after the cut of date no refunds will be made. Registration can be transferred to someone else from the same organization without additional charge.

Payment can be made with electronic invoicing, credit card, or direct bank transfer. Note that for electronic invoicing you need the operator and e-invoicing address (OVT code) of your organization. Please also note that invoice reference is needed for electronic invoicing in your organization, so please have this available when registering.
Content: laxmana.yetukuri@csc.fi
Practicalities: event-support@csc.fi


Course overview

Proteomics is a systems biology approach to study the entire protein complement of a cell, tissue, or organism. This large-scale study of proteins is increasingly popular in post genomics era and has found its widespread applications in fields including drug discovery, cardiovascular research, and nutrition research, just to name a few. This course will provide both theoretical and practical training at the introductory level.  Participants will learn the principles of current methodologies and apply bioinformatics tools for data analysis.

Course Content

  • Mass spectrometry-based proteomics in biological sciences

  • Quantitative proteomics

  • Protein identifications

  • Proteomics data processing with MaxQuant

  • Protein quantification and quality control

  • Statistical analysis in proteomics


This course is aimed at students and researchers who wants to know the basics of proteomics and are willing to apply bioinformatics tools for their analysis. Familiarity with mass spectrometry-based principle and some basic knowledge of R is considered beneficial.

Learning outcome

After the course participant are expected to understand the basics of proteomic methods and be able to use bioinformatics tools for their analyses.



9.00 - 9.15      Opening session and practicalities

9.15 - 9:45      MS-based Proteomics in Biosciences

9:45 - 10:00    Coffee break

10:00 -10:30   Targeted approaches in proteomics

10:30 - 11:00   Bioinformatics analysis of   proteomics data

11:00 - 11:20   Introduction to Maxquant software

11:20 - 12: 20  Lunch

12:20 - 14:15   Data processing with Maxquant software

14:15 - 14:30   Coffee break

14:30 - 15:00   Proteomics resources at csc

15:00 - 16:45   Statistical analysis with R

16:45 - 17:00   Course wrap-up


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