Training and EventsCSC Winter School in Bioinformatics 2013 - Training
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CSC Winter School in Bioinformatics 2013
| Päiväys: | 06.03.2013 10:30 - 09.03.2013 15:30 |
| Location details: | - |
| Kieli: | english-language |
| lecturers: |
Kimmo Mattila Ari-Matti Saren Eija Korpelainen Matti Kankainen |
| Hinta: | - |
This course provides a tutorial-style introduction to the essential, practical computational tools for life science research, with a focus on the infrastructure provided by CSC. The topics will include, e.g., managing your datasets, running analyses on a grid or a computer cluster, Unix power use, and basics of R programming. The workshop is a must for graduate students in the field, providing a comprehensive overview on the tools of the trade, without forgetting the important aspect of network building.
Program
| Tuesday March 5 | Wednesday March 6 | Thursday March 7 | Friday March 8 | |||||||
| 9.15-10.45 | Scientist's User Interface (sui.csc.fi); Scientific visualization |
Using Taito Cluster | Introduction to R | |||||||
| 10.45-11.15 | Registration & coffee | Coffee break | Coffee break | Coffee break | ||||||
| 11.15-12.00 | Introduction of the participants; course intro; Bio@CSC | Demo: Chipster | Using Taito cluster cont'd | Introduction to R cont'd | ||||||
| 12.00-13.00 | Lunch | Lunch | Lunch | Lunch | ||||||
| 13.00-13.45 | Introduction to CSC's computing environment | Scientific case 1 (Virpi Ahola) | Scientific case 2 (Tommi Nyrönen) | Introduction to R cont'd | ||||||
| 14.00-14.45 | Moving and storing data: IDA etc | Advanced Unix Features: shell scripting, awk, sed, utilities for large ASCII file manipulation | Running FGI applications at CSC |
Wrap-up & discussion | ||||||
| 14.45-15.15 | Coffee break | Coffee break | Coffee break | Walk-out & coffee | ||||||
| 15.15-16.30 | Moving and storing data cont'd | Advanced Unix Features cont'd | Using FGI in local computer |
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| 16.45-17.15 | Wrap-up & discussion | Wrap-up & discussion | Wrap-up & discussion | |||||||
| 17.15-20.00 | Poster session | Sauna evening & dinner | ||||||||